HL_7XNY_124
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7XNY_124 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1346
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7XNY|1|L2|A|32
7XNY|1|L2|U|33
7XNY|1|L2|C|34
7XNY|1|L2|U|35
7XNY|1|L2|C|36
7XNY|1|L2|G|37
7XNY|1|L2|U|38
7XNY|1|L2|C|39
7XNY|1|L2|U|40
7XNY|1|L2|G|41
7XNY|1|L2|A|42
7XNY|1|L2|U|43
7XNY|1|L2|C|44
7XNY|1|L2|U|45
Current chains
- Chain L2
- 5S rRNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LJ
- 60S ribosomal protein L11
Coloring options: