HL_7Y41_037

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGACAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y41_037 not in the Motif Atlas

Homologous match to HL_5J7L_167

Geometric discrepancy: 0.1163

The information below is about HL_5J7L_167

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7Y41|1|A|C|1478
7Y41|1|A|G|1479
7Y41|1|A|A|1480
7Y41|1|A|C|1481
7Y41|1|A|A|1482
7Y41|1|A|G|1483

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L28

Chain d

50S ribosomal protein L34