HL_7Z20_034
3D structure
- PDB id
- 7Z20 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.29 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7Z20_034 not in the Motif Atlas
- Geometric match to HL_5J7L_165
- Geometric discrepancy: 0.0773
- The information below is about HL_5J7L_165
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
7Z20|1|b|G|1280
7Z20|1|b|U|1281
7Z20|1|b|G|1282
7Z20|1|b|A|1283
7Z20|1|b|A|1284
7Z20|1|b|A|1285
7Z20|1|b|A|1286
7Z20|1|b|G|1287
7Z20|1|b|C|1288
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain n
- 50S ribosomal protein L17
- Chain s
- 50S ribosomal protein L22
Coloring options: