HL_7Z20_057

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z20_057 not in the Motif Atlas

Geometric match to HL_5J7L_188

Geometric discrepancy: 0.1719

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7Z20|1|b|G|2302
7Z20|1|b|G|2303
7Z20|1|b|U|2304
7Z20|1|b|C|2305
7Z20|1|b|G|2306
7Z20|1|b|G|2307
7Z20|1|b|A|2308
7Z20|1|b|C|2309
7Z20|1|b|A|2310
7Z20|1|b|U|2311
7Z20|1|b|C|2312

Current chains

Chain b

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5