HL_7Z34_007

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

7Z34|1|1|G|218, 7Z34|1|1|A|219, 7Z34|1|1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z34_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.3998

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7Z34|1|1|G|216
7Z34|1|1|U|217
7Z34|1|1|G|218
7Z34|1|1|A|219
7Z34|1|1|G|220
7Z34|1|1|A|221
7Z34|1|1|A|222
7Z34|1|1|U|223
7Z34|1|1|C|224

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A