HL_7Z34_068

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z34_068 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.1929

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7Z34|1|1|C|3025
7Z34|1|1|G|3026
7Z34|1|1|A|3027
7Z34|1|1|G|3028
7Z34|1|1|A|3029
7Z34|1|1|G|3030

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain V

60S ribosomal protein L23-A

Chain b

Nucleolar GTP-binding protein 1