HL_7Z34_079

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

7Z34|1|3|U|125, 7Z34|1|3|U|127, 7Z34|1|3|U|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z34_079 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2537

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7Z34|1|3|G|124
7Z34|1|3|U|125
7Z34|1|3|A|126
7Z34|1|3|U|127
7Z34|1|3|U|128
7Z34|1|3|C|129

Current chains

Chain 3

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA