HL_7ZFW_004

3D structure

PDB id

7ZFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 80S ribosome obtained from ssDNA coated grid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7ZFW|1|L5|G|135, 7ZFW|1|L5|C|136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZFW_004 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2331

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7ZFW|1|L5|C|131
7ZFW|1|L5|G|132
7ZFW|1|L5|C|133
7ZFW|1|L5|G|134
7ZFW|1|L5|G|135
7ZFW|1|L5|C|136
7ZFW|1|L5|G|137

Current chains

Chain L5

RNA (615-MER)

Nearby chains