HL_7ZFW_008

3D structure

PDB id

7ZFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 80S ribosome obtained from ssDNA coated grid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

7ZFW|1|L5|G|294, 7ZFW|1|L5|A|295, 7ZFW|1|L5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZFW_008 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.1153

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7ZFW|1|L5|C|289
7ZFW|1|L5|U|290
7ZFW|1|L5|U|291
7ZFW|1|L5|G|292
7ZFW|1|L5|G|293
7ZFW|1|L5|G|294
7ZFW|1|L5|A|295
7ZFW|1|L5|A|296
7ZFW|1|L5|U|297
7ZFW|1|L5|G|298

Current chains

Chain L5

RNA (615-MER)

Nearby chains