HL_7ZJW_003

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_003 not in the Motif Atlas

Geometric match to HL_5J7L_010

Geometric discrepancy: 0.1666

The information below is about HL_5J7L_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7ZJW|1|F|C|52
7ZJW|1|F|U|53
7ZJW|1|F|A|54
7ZJW|1|F|G|55
7ZJW|1|F|C|56
7ZJW|1|F|G|57

Current chains

Chain F

human Ser-tRNA-Sec

Nearby chains

Chain E

eEFSec

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SD

40S ribosomal protein S27a