HL_7ZJW_007

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUAGGUAG

Length

8 nucleotides

Bulged bases

7ZJW|1|I|U|186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_007 not in the Motif Atlas

Geometric match to HL_4V83_220

Geometric discrepancy: 0.1855

The information below is about HL_4V83_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7ZJW|1|I|U|185
7ZJW|1|I|U|186
7ZJW|1|I|A|187
7ZJW|1|I|G|188
7ZJW|1|I|G|189
7ZJW|1|I|U|190
7ZJW|1|I|A|191
7ZJW|1|I|G|192

Current chains

Chain I

CrPV IRES

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sa

40S ribosomal protein uS19

Chain Sb

40S ribosomal protein uS9