3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGUGG
Length
5 nucleotides
Bulged bases
7ZJW|1|L5|U|224, 7ZJW|1|L5|G|225
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ZJW_013 not in the Motif Atlas
Homologous match to HL_8C3A_006
Geometric discrepancy: 0.1663
The information below is about HL_8C3A_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_71121.1
Basepair signature
cWW-F
Number of instances in this motif group
24

Unit IDs

7ZJW|1|L5|C|222
7ZJW|1|L5|G|223
7ZJW|1|L5|U|224
7ZJW|1|L5|G|225
7ZJW|1|L5|G|226

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LF
60S ribosomal protein L4
Chain Lb
60S ribosomal protein L26

Coloring options:


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