3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CC(PSU)CAG
Length
6 nucleotides
Bulged bases
7ZJW|1|L5|C|1631, 7ZJW|1|L5|C|1633, 7ZJW|1|L5|A|1634
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ZJW_034 not in the Motif Atlas
Homologous match to HL_8C3A_022
Geometric discrepancy: 0.271
The information below is about HL_8C3A_022
Detailed Annotation
Externally structured
Broad Annotation
Externally structured
Motif group
HL_96426.1
Basepair signature
cWW-F
Number of instances in this motif group
4

Unit IDs

7ZJW|1|L5|C|1630
7ZJW|1|L5|C|1631
7ZJW|1|L5|PSU|1632
7ZJW|1|L5|C|1633
7ZJW|1|L5|A|1634
7ZJW|1|L5|G|1635

Current chains

Chain L5
28S rRNA

Nearby chains

Chain Ld
60S ribosomal protein L27a
Chain Le
60S ribosomal protein L29
Chain Lq
60S ribosomal protein eL42

Coloring options:


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