HL_7ZJW_034
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CC(PSU)CAG
- Length
- 6 nucleotides
- Bulged bases
- 7ZJW|1|L5|C|1631, 7ZJW|1|L5|C|1633, 7ZJW|1|L5|A|1634
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJW_034 not in the Motif Atlas
- Homologous match to HL_8C3A_022
- Geometric discrepancy: 0.271
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7ZJW|1|L5|C|1630
7ZJW|1|L5|C|1631
7ZJW|1|L5|PSU|1632
7ZJW|1|L5|C|1633
7ZJW|1|L5|A|1634
7ZJW|1|L5|G|1635
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Ld
- 60S ribosomal protein L27a
- Chain Le
- 60S ribosomal protein L29
- Chain Lq
- 60S ribosomal protein eL42
Coloring options: