HL_7ZJW_035

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_035 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1981

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7ZJW|1|L5|C|1702
7ZJW|1|L5|G|1703
7ZJW|1|L5|A|1704
7ZJW|1|L5|A|1705
7ZJW|1|L5|A|1706
7ZJW|1|L5|C|1707
7ZJW|1|L5|G|1708

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Sa

40S ribosomal protein uS19

Chain Sd

40S ribosomal protein S18