HL_7ZJW_038

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

7ZJW|1|L5|A|1830, 7ZJW|1|L5|A|1831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_038 not in the Motif Atlas

Homologous match to HL_8C3A_026

Geometric discrepancy: 0.0967

The information below is about HL_8C3A_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7ZJW|1|L5|G|1825
7ZJW|1|L5|G|1826
7ZJW|1|L5|A|1827
7ZJW|1|L5|U|1828
7ZJW|1|L5|G|1829
7ZJW|1|L5|A|1830
7ZJW|1|L5|A|1831
7ZJW|1|L5|C|1832

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LI

60S ribosomal Protein uL30

Chain Lh

60S ribosomal protein eL32

Chain Li

60S ribosomal protein eL33