HL_7ZJW_039

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7ZJW|1|L5|A|1923

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_039 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3564

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7ZJW|1|L5|C|1917
7ZJW|1|L5|A|1918
7ZJW|1|L5|U|1919
7ZJW|1|L5|G|1920
7ZJW|1|L5|G|1921
7ZJW|1|L5|A|1922
7ZJW|1|L5|A|1923
7ZJW|1|L5|G|1924
7ZJW|1|L5|U|1925
7ZJW|1|L5|C|1926
7ZJW|1|L5|G|1927

Current chains

Chain L5

28S rRNA

Nearby chains