HL_7ZJW_052

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_052 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5211

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7ZJW|1|L5|G|2507
7ZJW|1|L5|U|2508
7ZJW|1|L5|U|2509
7ZJW|1|L5|C|2510
7ZJW|1|L5|G|2511
7ZJW|1|L5|C|2512
7ZJW|1|L5|C|2513

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

60S ribosomal protein L19

Chain Lr

60S ribosomal protein eL43