HL_7ZJW_057

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

7ZJW|1|L5|U|2717

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_057 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0892

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7ZJW|1|L5|C|2715
7ZJW|1|L5|U|2716
7ZJW|1|L5|U|2717
7ZJW|1|L5|C|2718
7ZJW|1|L5|OMG|2719
7ZJW|1|L5|G|2720

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lr

60S ribosomal protein eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sl

60S ribosomal protein L41