HL_7ZJW_060
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- G(PSU)UUAAUUAAAAC
- Length
- 13 nucleotides
- Bulged bases
- 7ZJW|1|L5|A|3374, 7ZJW|1|L5|A|3375, 7ZJW|1|L5|U|3376, 7ZJW|1|L5|A|3380
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJW_060 not in the Motif Atlas
- Geometric match to HL_7A0S_045
- Geometric discrepancy: 0.3054
- The information below is about HL_7A0S_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_60266.1
- Basepair signature
- cWW-cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7ZJW|1|L5|G|3370
7ZJW|1|L5|PSU|3371
7ZJW|1|L5|U|3372
7ZJW|1|L5|U|3373
7ZJW|1|L5|A|3374
7ZJW|1|L5|A|3375
7ZJW|1|L5|U|3376
7ZJW|1|L5|U|3377
7ZJW|1|L5|A|3378
7ZJW|1|L5|A|3379
7ZJW|1|L5|A|3380
7ZJW|1|L5|A|3381
7ZJW|1|L5|C|3382
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein uL2
- Chain Lm
- 60S ribosomal protein L37
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