HL_7ZJW_081

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_081 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1522

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7ZJW|1|L5|U|4392
7ZJW|1|L5|G|4393
7ZJW|1|L5|A|4394
7ZJW|1|L5|G|4395
7ZJW|1|L5|G|4396
7ZJW|1|L5|A|4397

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

60S ribosomal protein L19

Chain LX

60S ribosomal protein eL22

Chain Lg

60S ribosomal protein eL31