HL_7ZJW_092

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCCUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_092 not in the Motif Atlas

Geometric match to HL_6DB9_001

Geometric discrepancy: 0.3344

The information below is about HL_6DB9_001

Detailed Annotation

Fab BL3-6 binding hairpin with tSW

Broad Annotation

No text annotation

Motif group

HL_22584.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

26

Unit IDs

7ZJW|1|L8|G|122
7ZJW|1|L8|U|123
7ZJW|1|L8|U|124
7ZJW|1|L8|C|125
7ZJW|1|L8|C|126
7ZJW|1|L8|U|127
7ZJW|1|L8|C|128

Current chains

Chain L8

5.8S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain La

60S ribosomal protein uL23