HL_7ZJW_096

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

7ZJW|1|S2|A|158, 7ZJW|1|S2|U|160, 7ZJW|1|S2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_096 not in the Motif Atlas

Geometric match to HL_4V88_188

Geometric discrepancy: 0.1389

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZJW|1|S2|G|156
7ZJW|1|S2|U|157
7ZJW|1|S2|A|158
7ZJW|1|S2|A2M|159
7ZJW|1|S2|U|160
7ZJW|1|S2|U|161
7ZJW|1|S2|C|162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S6

Chain Sj

40S ribosomal protein S24