HL_7ZJW_105

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_105 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2468

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7ZJW|1|S2|C|499
7ZJW|1|S2|G|500
7ZJW|1|S2|A|501
7ZJW|1|S2|C|502
7ZJW|1|S2|C|503
7ZJW|1|S2|C|504
7ZJW|1|S2|G|505

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein eS4

Chain Sj

40S ribosomal protein S24