HL_7ZJW_106

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUUUCGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_106 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3972

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

7ZJW|1|S2|U|539
7ZJW|1|S2|C|540
7ZJW|1|S2|U|541
7ZJW|1|S2|U|542
7ZJW|1|S2|U|543
7ZJW|1|S2|C|544
7ZJW|1|S2|G|545
7ZJW|1|S2|A|546

Current chains

Chain S2

18S rRNA

Nearby chains