HL_7ZJW_108

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_108 not in the Motif Atlas

Geometric match to HL_4V88_200

Geometric discrepancy: 0.0975

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZJW|1|S2|C|619
7ZJW|1|S2|A|620
7ZJW|1|S2|G|621
7ZJW|1|S2|C|622
7ZJW|1|S2|C|623
7ZJW|1|S2|G|624

Current chains

Chain S2

18S rRNA

Nearby chains

Chain I

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain Si

40S ribosomal protein S23