HL_7ZJW_132

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

7ZJW|1|L5|C|1269

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_132 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0717

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7ZJW|1|L5|U|1261
7ZJW|1|L5|C|1262
7ZJW|1|L5|U|1263
7ZJW|1|L5|U|1264
7ZJW|1|L5|G|1265
7ZJW|1|L5|1MA|1266
7ZJW|1|L5|A|1267
7ZJW|1|L5|A|1268
7ZJW|1|L5|C|1269
7ZJW|1|L5|A2M|1270

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain Ld

60S ribosomal protein L27a

Chain Lh

60S ribosomal protein eL32