HL_7ZJW_140

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

7ZJW|1|S2|A|465

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_140 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.131

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7ZJW|1|S2|OMC|463
7ZJW|1|S2|C|464
7ZJW|1|S2|A|465
7ZJW|1|S2|A|466
7ZJW|1|S2|G|467
7ZJW|1|S2|G|468

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LY

60S ribosomal protein L23

Chain SR

40S ribosomal protein S6