HL_7ZJW_145
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 7ZJW|1|S2|U|1301, 7ZJW|1|S2|G|1303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJW_145 not in the Motif Atlas
- Homologous match to HL_8CRE_217
- Geometric discrepancy: 0.1739
- The information below is about HL_8CRE_217
- Detailed Annotation
- GNRA wlth extra near cWW
- Broad Annotation
- GNRA wlth extra near cWW
- Motif group
- HL_81538.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
7ZJW|1|S2|A|1296
7ZJW|1|S2|U|1297
7ZJW|1|S2|U|1298
7ZJW|1|S2|G|1299
7ZJW|1|S2|A|1300
7ZJW|1|S2|U|1301
7ZJW|1|S2|A|1302
7ZJW|1|S2|G|1303
7ZJW|1|S2|C|1304
7ZJW|1|S2|U|1305
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain B
- SECIS Binding Protein 2
- Chain E
- eEFSec
- Chain S
- Selenocysteine insertion sequence 1; SECIS_1
- Chain SD
- 40S ribosomal protein S27a
- Chain SH
- 40S ribosomal protein uS14
- Chain Sa
- 40S ribosomal protein uS19
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