3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AUUGAUAGCU
Length
10 nucleotides
Bulged bases
7ZJW|1|S2|U|1301, 7ZJW|1|S2|G|1303
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ZJW_145 not in the Motif Atlas
Homologous match to HL_8CRE_217
Geometric discrepancy: 0.1739
The information below is about HL_8CRE_217
Detailed Annotation
GNRA wlth extra near cWW
Broad Annotation
GNRA wlth extra near cWW
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

7ZJW|1|S2|A|1296
7ZJW|1|S2|U|1297
7ZJW|1|S2|U|1298
7ZJW|1|S2|G|1299
7ZJW|1|S2|A|1300
7ZJW|1|S2|U|1301
7ZJW|1|S2|A|1302
7ZJW|1|S2|G|1303
7ZJW|1|S2|C|1304
7ZJW|1|S2|U|1305

Current chains

Chain S2
18S rRNA

Nearby chains

Chain B
SECIS Binding Protein 2
Chain E
eEFSec
Chain S
Selenocysteine insertion sequence 1; SECIS_1
Chain SD
40S ribosomal protein S27a
Chain SH
40S ribosomal protein uS14
Chain Sa
40S ribosomal protein uS19

Coloring options:


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