HL_7ZJX_024
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUUCCAGUCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJX_024 not in the Motif Atlas
- Geometric match to HL_1ZCI_002
- Geometric discrepancy: 0.3882
- The information below is about HL_1ZCI_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_94376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7ZJX|1|L5|C|1392
7ZJX|1|L5|C|1393
7ZJX|1|L5|U|1394
7ZJX|1|L5|U|1395
7ZJX|1|L5|C|1396
7ZJX|1|L5|C|1397
7ZJX|1|L5|A|1398
7ZJX|1|L5|G|1399
7ZJX|1|L5|U|1400
7ZJX|1|L5|C|1401
7ZJX|1|L5|C|1402
7ZJX|1|L5|G|1403
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4
- Chain LI
- 60S ribosomal Protein uL30
- Chain LT
- 60S ribosomal Protein eL18
- Chain Le
- 60S ribosomal protein L29
Coloring options: