HL_7ZJX_027

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7ZJX|1|L5|U|1551, 7ZJX|1|L5|A|1555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_027 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.1103

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7ZJX|1|L5|A|1548
7ZJX|1|L5|C|1549
7ZJX|1|L5|G|1550
7ZJX|1|L5|U|1551
7ZJX|1|L5|G|1552
7ZJX|1|L5|C|1553
7ZJX|1|L5|A|1554
7ZJX|1|L5|A|1555
7ZJX|1|L5|A|1556
7ZJX|1|L5|U|1557

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein uL3

Chain LS

60S ribosomal protein uL22

Chain Lm

Ribosomal protein L37