HL_7ZJX_028

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7ZJX|1|L5|A|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_028 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.127

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7ZJX|1|L5|G|1582
7ZJX|1|L5|C|1583
7ZJX|1|L5|G|1584
7ZJX|1|L5|A|1585
7ZJX|1|L5|A|1586
7ZJX|1|L5|A|1587
7ZJX|1|L5|G|1588
7ZJX|1|L5|A|1589
7ZJX|1|L5|C|1590

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain LQ

Ribosomal protein L15

Chain Lm

Ribosomal protein L37