HL_7ZJX_031

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

7ZJX|1|L5|G|1760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_031 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.3595

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7ZJX|1|L5|C|1755
7ZJX|1|L5|U|1756
7ZJX|1|L5|G|1757
7ZJX|1|L5|G|1758
7ZJX|1|L5|C|1759
7ZJX|1|L5|G|1760
7ZJX|1|L5|U|1761
7ZJX|1|L5|G|1762

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

Ribosomal_L18_c domain-containing protein

Chain LW

60S ribosomal protein L21

Chain Le

60S ribosomal protein L29