HL_7ZJX_035

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_035 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.1898

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7ZJX|1|L5|U|1945
7ZJX|1|L5|G|1946
7ZJX|1|L5|U|1947
7ZJX|1|L5|A|1948
7ZJX|1|L5|A|1949
7ZJX|1|L5|C|1950
7ZJX|1|L5|A|1951
7ZJX|1|L5|A|1952

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lp

60S ribosomal protein L40