HL_7ZJX_055

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(PSU)UUAAUUAAAAC

Length

13 nucleotides

Bulged bases

7ZJX|1|L5|A|3374, 7ZJX|1|L5|A|3375, 7ZJX|1|L5|U|3376, 7ZJX|1|L5|A|3380

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_055 not in the Motif Atlas

Geometric match to HL_7A0S_045

Geometric discrepancy: 0.2923

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60266.1

Basepair signature

cWW-cWW-tWH-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7ZJX|1|L5|G|3370
7ZJX|1|L5|PSU|3371
7ZJX|1|L5|U|3372
7ZJX|1|L5|U|3373
7ZJX|1|L5|A|3374
7ZJX|1|L5|A|3375
7ZJX|1|L5|U|3376
7ZJX|1|L5|U|3377
7ZJX|1|L5|A|3378
7ZJX|1|L5|A|3379
7ZJX|1|L5|A|3380
7ZJX|1|L5|A|3381
7ZJX|1|L5|C|3382

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain Lm

Ribosomal protein L37