HL_7ZJX_058

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

7ZJX|1|L5|C|3493

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_058 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.4343

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7ZJX|1|L5|G|3489
7ZJX|1|L5|PSU|3490
7ZJX|1|L5|A|3491
7ZJX|1|L5|A2M|3492
7ZJX|1|L5|C|3493
7ZJX|1|L5|PSU|3494
7ZJX|1|L5|A|3495
7ZJX|1|L5|PSU|3496
7ZJX|1|L5|G|3497
7ZJX|1|L5|A|3498
7ZJX|1|L5|C|3499

Current chains

Chain L5

28S rRNA

Nearby chains

Chain I

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain S2

Small subunit ribosomal RNA; SSU rRNA