HL_7ZJX_064

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

7ZJX|1|L5|A|3960, 7ZJX|1|L5|C|3967

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_064 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1101

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7ZJX|1|L5|U|3956
7ZJX|1|L5|C|3957
7ZJX|1|L5|A|3958
7ZJX|1|L5|A|3959
7ZJX|1|L5|A|3960
7ZJX|1|L5|C|3961
7ZJX|1|L5|G|3962
7ZJX|1|L5|G|3963
7ZJX|1|L5|U|3964
7ZJX|1|L5|A|3965
7ZJX|1|L5|6MZ|3966
7ZJX|1|L5|C|3967
7ZJX|1|L5|G|3968

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Ribosomal protein L10

Chain LW

60S ribosomal protein L21

Chain Le

60S ribosomal protein L29