HL_7ZJX_070

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

7ZJX|1|L5|U|4165, 7ZJX|1|L5|A|4168

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_070 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.5654

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7ZJX|1|L5|C|4163
7ZJX|1|L5|G|4164
7ZJX|1|L5|U|4165
7ZJX|1|L5|PSU|4166
7ZJX|1|L5|C|4167
7ZJX|1|L5|A|4168
7ZJX|1|L5|PSU|4169
7ZJX|1|L5|A|4170
7ZJX|1|L5|G|4171

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Ribosomal protein L10

Chain Lp

60S ribosomal protein L40