HL_7ZJX_108
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GA(PSU)CAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 7ZJX|1|S2|U|1062
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJX_108 not in the Motif Atlas
- Geometric match to HL_4LFB_017
- Geometric discrepancy: 0.2155
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
7ZJX|1|S2|G|1055
7ZJX|1|S2|A|1056
7ZJX|1|S2|PSU|1057
7ZJX|1|S2|C|1058
7ZJX|1|S2|A|1059
7ZJX|1|S2|G|1060
7ZJX|1|S2|A|1061
7ZJX|1|S2|U|1062
7ZJX|1|S2|A|1063
7ZJX|1|S2|C|1064
7ZJX|1|S2|C|1065
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SF
- 40S ribosomal protein eS26
- Chain SM
- 40S ribosomal protein S3a
- Chain SZ
- 40S ribosomal protein uS11
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