HL_7ZP8_003

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

7ZP8|1|b|G|60

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZP8_003 not in the Motif Atlas

Geometric match to HL_6JXM_002

Geometric discrepancy: 0.3861

The information below is about HL_6JXM_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7ZP8|1|b|U|59
7ZP8|1|b|G|60
7ZP8|1|b|C|61
7ZP8|1|b|U|62
7ZP8|1|b|A|63
7ZP8|1|b|A|64
7ZP8|1|b|U|65
7ZP8|1|b|C|66
7ZP8|1|b|U|67
7ZP8|1|b|G|68

Current chains

Chain b

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L29

Chain t

50S ribosomal protein L23