HL_7ZP8_056

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7ZP8|1|b|A|2268, 7ZP8|1|b|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZP8_056 not in the Motif Atlas

Geometric match to HL_7RQB_054

Geometric discrepancy: 0.1374

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7ZP8|1|b|C|2264
7ZP8|1|b|U|2265
7ZP8|1|b|A|2266
7ZP8|1|b|A|2267
7ZP8|1|b|A|2268
7ZP8|1|b|G|2269
7ZP8|1|b|A|2270
7ZP8|1|b|G|2271
7ZP8|1|b|U|2272
7ZP8|1|b|A|2273
7ZP8|1|b|A|2274
7ZP8|1|b|C|2275
7ZP8|1|b|G|2276

Current chains

Chain b

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain y

50S ribosomal protein L27