HL_7ZP8_058

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZP8_058 not in the Motif Atlas

Geometric match to HL_5J7L_189

Geometric discrepancy: 0.1148

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

7ZP8|1|b|U|2324
7ZP8|1|b|G|2325
7ZP8|1|b|C|2326
7ZP8|1|b|A|2327
7ZP8|1|b|A|2328
7ZP8|1|b|U|2329
7ZP8|1|b|G|2330
7ZP8|1|b|G|2331

Current chains

Chain b

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5

Chain v

Transfer RNA; tRNA

Chain y

50S ribosomal protein L27