HL_7ZP8_068

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7ZP8|1|b|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZP8_068 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.1131

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7ZP8|1|b|C|2745
7ZP8|1|b|U|2746
7ZP8|1|b|G|2747
7ZP8|1|b|A|2748
7ZP8|1|b|A|2749
7ZP8|1|b|A|2750
7ZP8|1|b|G|2751
7ZP8|1|b|C|2752
7ZP8|1|b|A|2753
7ZP8|1|b|U|2754
7ZP8|1|b|C|2755
7ZP8|1|b|U|2756
7ZP8|1|b|A|2757
7ZP8|1|b|A|2758
7ZP8|1|b|G|2759

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain j

50S ribosomal protein L13