HL_7ZPQ_005

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7ZPQ|1|2|U|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_005 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2725

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7ZPQ|1|2|C|230
7ZPQ|1|2|U|231
7ZPQ|1|2|U|232
7ZPQ|1|2|C|233
7ZPQ|1|2|G|234
7ZPQ|1|2|G|235

Current chains

Chain 2

18S ribosomal RNA

Nearby chains