HL_7ZPQ_013

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

7ZPQ|1|2|A|492, 7ZPQ|1|2|U|493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_013 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.344

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7ZPQ|1|2|C|491
7ZPQ|1|2|A|492
7ZPQ|1|2|U|493
7ZPQ|1|2|U|494
7ZPQ|1|2|C|495
7ZPQ|1|2|G|496

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain CA

SLH1 isoform 1