HL_7ZPQ_033

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_033 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.092

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZPQ|1|2|C|1501
7ZPQ|1|2|G|1502
7ZPQ|1|2|A|1503
7ZPQ|1|2|G|1504
7ZPQ|1|2|A|1505
7ZPQ|1|2|G|1506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AP

RPS15 isoform 1

Chain AS

40S ribosomal protein S18-A

Chain AT

40S ribosomal protein S19-A