HL_7ZPQ_039
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CACAUUG
- Length
- 7 nucleotides
- Bulged bases
- 7ZPQ|1|3|A|111, 7ZPQ|1|3|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZPQ_039 not in the Motif Atlas
- Homologous match to HL_5TBW_075
- Geometric discrepancy: 0.0999
- The information below is about HL_5TBW_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
7ZPQ|1|3|C|108
7ZPQ|1|3|A|109
7ZPQ|1|3|C|110
7ZPQ|1|3|A|111
7ZPQ|1|3|U|112
7ZPQ|1|3|U|113
7ZPQ|1|3|G|114
Current chains
- Chain 3
- 5.8S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BW
- 60S ribosomal protein L25
- Chain Bi
- 60S ribosomal protein L37-A
- Chain Bk
- 60S ribosomal protein L39
Coloring options: