HL_7ZPQ_048

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

7ZPQ|1|5|U|210, 7ZPQ|1|5|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_048 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.075

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7ZPQ|1|5|C|208
7ZPQ|1|5|A|209
7ZPQ|1|5|U|210
7ZPQ|1|5|A|211
7ZPQ|1|5|G|212

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BC

RPL4A isoform 1

Chain BX

60S ribosomal protein L26-A