HL_7ZPQ_056
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 7ZPQ|1|5|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZPQ_056 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.0691
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
7ZPQ|1|5|U|640
7ZPQ|1|5|C|641
7ZPQ|1|5|U|642
7ZPQ|1|5|U|643
7ZPQ|1|5|G|644
7ZPQ|1|5|A|645
7ZPQ|1|5|A|646
7ZPQ|1|5|A|647
7ZPQ|1|5|C|648
7ZPQ|1|5|A|649
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BB
- 60S ribosomal protein L3
- Chain BZ
- 60S ribosomal protein L28
- Chain Bd
- RPL32 isoform 1
Coloring options: