HL_7ZPQ_071
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 7ZPQ|1|5|U|1351, 7ZPQ|1|5|G|1354, 7ZPQ|1|5|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZPQ_071 not in the Motif Atlas
- Homologous match to HL_5TBW_029
- Geometric discrepancy: 0.4053
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7ZPQ|1|5|U|1347
7ZPQ|1|5|U|1348
7ZPQ|1|5|G|1349
7ZPQ|1|5|A|1350
7ZPQ|1|5|U|1351
7ZPQ|1|5|A|1352
7ZPQ|1|5|U|1353
7ZPQ|1|5|G|1354
7ZPQ|1|5|A|1355
7ZPQ|1|5|U|1356
7ZPQ|1|5|G|1357
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BC
- RPL4A isoform 1
- Chain BE
- 60S ribosomal protein L6-B
- Chain BP
- 60S ribosomal protein L18-A
- Chain Bd
- RPL32 isoform 1
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