HL_7ZPQ_074

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7ZPQ|1|5|G|1507, 7ZPQ|1|5|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_074 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.0934

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7ZPQ|1|5|A|1506
7ZPQ|1|5|G|1507
7ZPQ|1|5|C|1508
7ZPQ|1|5|A|1509
7ZPQ|1|5|G|1510
7ZPQ|1|5|U|1511
7ZPQ|1|5|U|1512

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BO

60S ribosomal protein L17-A

Chain BQ

60S ribosomal protein L19-A

Chain Bk

60S ribosomal protein L39